Disease Microbe Position Evidence PMID Colon cancer Collinsella aerofaciens Gastrointestinal tract Increase 7574628 Periodontal Fusobacterium Subgingival Increase 9495612 Periodontal Porphyromonas gingivalis Subgingival Increase 9495612 Periodontal Prevotella Subgingival Increase 9495612 Periodontal Treponema Subgingival Increase 9495612 Gastric and duodenal ulcer Helicobacter pylori Gastric Increase 9863476 Gastro-oesophageal reflux Helicobacter pylori Gastric Decrease 9863476 Guttate psoriasis Staphylococcus aureus Skin Increase 10671976 Atopy Clostridia Gastrointestinal tract Increase 11150002 Diarrhea Irritable bowel syndrome(IBS) Bifidobacterium Gastrointestinal tract Decrease 15667495 Irritable bowel syndrome(IBS) Bifidobacterium catenulatum Gastrointestinal tract Decrease 15667495 Irritable bowel syndrome(IBS) Clostridium coccoides Gastrointestinal tract Decrease 15667495 Diarrhea Irritable bowel syndrome(IBS) Desulfovibrio Gastrointestinal tract Decrease 15667495 Irritable bowel syndrome(IBS) Ruminococcus productus Gastrointestinal tract Increase 15667495 Constipation Irritable bowel syndrome(IBS) Veillonella Gastrointestinal tract Increase 15667495 Obesity Bacteroidetes Cecal Decrease 16033867 Obesity Firmicutes Cecal Increase 16033867 Ileal Crohn's disease(CD) Bacteroides fragilis Gastrointestinal tract Decrease 16188921 Ileal Crohn's disease(CD) Clostridium coccoides Gastrointestinal tract Decrease 16188921 Ileal Crohn's disease(CD) Clostridium leptum Gastrointestinal tract Decrease 16188921 Ileal Crohn's disease(CD) Prevotella Gastrointestinal tract Decrease 16188921 Bacterial Vaginosis Atopobium Vaginal Increase 16267321 Bacterial Vaginosis Atopobium vaginae Vaginal Increase 16267321 Bacterial Vaginosis Clostridiales Vaginal Increase 16267321 Bacterial Vaginosis Eggerthella Vaginal Increase 16267321 Bacterial Vaginosis Gardnerella vaginalis Vaginal Increase 16267321 Bacterial Vaginosis Lactobacillus crispatus Vaginal Decrease 16267321 Bacterial Vaginosis Leptotrichia Vaginal Increase 16267321 Bacterial Vaginosis Megasphaera Vaginal Increase 16267321 Infectious colitis Bacteroides Gastrointestinal tract Increase 16432374 Ulcerative colitis Clostridium coccoides Gastrointestinal tract Decrease 16432374 Crohn's disease(CD) Clostridium leptum Gastrointestinal tract Decrease 16432374 Allergic sensitization Clostridium difficile Gastrointestinal tract Increase 17047098 Atopic dermatitis Clostridium difficile Gastrointestinal tract Increase 17047098 Atopic sensitisation Clostridium difficile Gastrointestinal tract Increase 17047098 Eczema Clostridium difficile Gastrointestinal tract Increase 17047098 Recurrent wheeze Clostridium difficile Gastrointestinal tract Increase 17047098 Eczema Escherichia coli Gastrointestinal tract Increase 17047098 Obesity Bacteroidetes Gastrointestinal tract Decrease 17183309 Obesity Firmicutes Gastrointestinal tract Increase 17183309 Allergy Helicobacter pylori Gastric Decrease 17452546 Asthma Helicobacter pylori Gastric Decrease 17452546 Irritable bowel syndrome(IBS) Clostridium cocleatum Gastrointestinal tract Decrease 17631127 Irritable bowel syndrome(IBS) Collinsella aerofaciens Gastrointestinal tract Decrease 17631127 Irritable bowel syndrome(IBS) Coprococcus Gastrointestinal tract Increase 17631127 Inflammatory bowel disease(IBD) Actinobacteria Gastrointestinal tract Decrease 17699621 Inflammatory bowel disease(IBD) Lachnospiraceae Gastrointestinal tract Increase 17699621 Inflammatory bowel disease(IBD) Proteobacteria Gastrointestinal tract Decrease 17699621 Atopic dermatitis Dietzia maris Skin Decrease 18033838 Atopic dermatitis Stenotrophomonas maltophilia Skin Increase 18033838 Cystic fibrosis Coxiellaceae Bronchoalveolar Increase 18077362 Cystic fibrosis Lysobacter Bronchoalveolar Increase 18077362 Cystic fibrosis Rickettsiales Bronchoalveolar Increase 18077362 Cystic fibrosis Staphylococcus aureus Bronchoalveolar Increase 18077362 Cystic fibrosis Stenotrophomonas maltophilia Bronchoalveolar Increase 18077362 Cystic fibrosis Streptococcus mitis Bronchoalveolar Decrease 18077362 Obesity Staphylococcus aureus Gastrointestinal tract Increase 18326589 Crohn's disease(CD) Bacteroides ovatus Gastrointestinal tract Increase 18401439 Ileal Crohn's disease(CD) Bacteroides ovatus Gastrointestinal tract Increase 18401439 Crohn's disease(CD) Bacteroides uniformis Gastrointestinal tract Decrease 18401439 Ileal Crohn's disease(CD) Bacteroides uniformis Gastrointestinal tract Decrease 18401439 Crohn's disease(CD) Bacteroides vulgatus Gastrointestinal tract Increase 18401439 Ileal Crohn's disease(CD) Bacteroides vulgatus Gastrointestinal tract Increase 18401439 Bacterial Vaginosis Betaproteobacteria Vaginal Increase 18487399 Bacterial Vaginosis Candidate division TM7 Vaginal Increase 18487399 Bacterial Vaginosis Clostridium Vaginal Increase 18487399 Bacterial Vaginosis Fusobacteria Vaginal Increase 18487399 Bacterial Vaginosis Lactobacillus Vaginal Decrease 18487399 Bacterial Vaginosis Megasphaera Vaginal Increase 18487399 Bacterial Vaginosis Olsenella Vaginal Increase 18487399 Bacterial Vaginosis Porphyromonas uenonis Vaginal Increase 18487399 Bacterial Vaginosis Shuttleworthia Vaginal Increase 18487399 Bacterial Vaginosis Streptobacillus Vaginal Increase 18487399 Rheumatoid arthrits Bifidobacterium Gastrointestinal tract Decrease 18528968 Rheumatoid arthrits Clostridium coccoides Gastrointestinal tract Decrease 18528968 Rheumatoid arthrits Prevotella Gastrointestinal tract Decrease 18528968 Psoriasis Actinobacteria Skin Decrease 18648509 Psoriasis Firmicutes Skin Increase 18648509 Psoriasis Propionibacterium Skin Decrease 18648509 Psoriasis Propionibacterium acnes Skin Decrease 18648509 Psoriasis Streptococcus Skin Increase 18648509 Obesity Firmicutes Large intestine Increase 18779823 Obesity Alcaligenaceae Gastrointestinal tract Increase 19164560 Obesity Coriobacteriaceae Gastrointestinal tract Increase 19164560 Obesity Erysipelotrichaceae Gastrointestinal tract Increase 19164560 Obesity Methanobrevibacter smithii Gastrointestinal tract Increase 19164560 Obesity Prevotellaceae Gastrointestinal tract Increase 19164560 Crohn's disease(CD) Clostridium leptum Gastrointestinal tract Decrease 19235886 Crohn's disease(CD) Enterobacteriaceae Gastrointestinal tract Increase 19235886 Crohn's disease(CD) Faecalibacterium prausnitzii Gastrointestinal tract Decrease 19235886 Crohn's disease(CD) Firmicutes Gastrointestinal tract Decrease 19235886 Necrotizing Enterocolitis Enterobacter aerogenes Gastrointestinal tract Increase 19369970 Necrotizing Enterocolitis Enterobacter hormaechei Gastrointestinal tract Decrease 19369970 Necrotizing Enterocolitis Enterococcus Gastrointestinal tract Increase 19369970 Necrotizing Enterocolitis Firmicutes Gastrointestinal tract Decrease 19369970 Necrotizing Enterocolitis Gammaproteobacteria Gastrointestinal tract Increase 19369970 Necrotizing Enterocolitis Klebsiella pneumoniae Gastrointestinal tract Decrease 19369970 Necrotizing Enterocolitis Proteobacteria Gastrointestinal tract Increase 19369970 Necrotizing Enterocolitis Shigella dysenteriae Gastrointestinal tract Decrease 19369970 Necrotizing Enterocolitis Staphylococcus Gastrointestinal tract Increase 19369970 Necrotizing Enterocolitis Veillonella Gastrointestinal tract Increase 19369970 Obesity Bacteroidetes Gastrointestinal tract Decrease 19498350 Obesity Firmicutes Gastrointestinal tract Increase 19498350 Irritable bowel syndrome(IBS) Bifidobacterium catenulatum Duodenal Decrease 19533811 Necrotizing Enterocolitis Citrobacter Gastrointestinal tract Increase 19783002 Necrotizing Enterocolitis Enterobacteriaceae Gastrointestinal tract Decrease 19783002 Systemic inflammatory response syndrome Enterobacteriaceae Gastrointestinal tract Decrease 19783002 Necrotizing Enterocolitis Enterococcus Gastrointestinal tract Increase 19783002 Systemic inflammatory response syndrome Enterococcus Gastrointestinal tract Increase 19783002 Necrotizing Enterocolitis Klebsiella Gastrointestinal tract Decrease 19783002 Systemic inflammatory response syndrome Klebsiella Gastrointestinal tract Decrease 19783002 Asthma Bacteroidetes Bronchial tree Decrease 20052417 COPD Bacteroidetes Bronchial tree Decrease 20052417 Asthma Haemophilus Bronchial tree Increase 20052417 COPD Haemophilus Bronchial tree Increase 20052417 Asthma Prevotella Bronchial tree Decrease 20052417 COPD Prevotella Bronchial tree Decrease 20052417 Asthma Proteobacteria Bronchial tree Increase 20052417 COPD Proteobacteria Bronchial tree Increase 20052417 Asthma Staphylococcus Bronchial tree Increase 20052417 Type 2 diabetes Bacilli Gastrointestinal tract Increase 20140211 Type 2 diabetes Bacteroidetes Gastrointestinal tract Increase 20140211 Type 2 diabetes Betaproteobacteria Gastrointestinal tract Increase 20140211 Type 2 diabetes Clostridia Gastrointestinal tract Decrease 20140211 Type 2 diabetes Clostridium Gastrointestinal tract Decrease 20140211 Type 2 diabetes Clostridium coccoides Gastrointestinal tract Decrease 20140211 Type 2 diabetes Firmicutes Gastrointestinal tract Decrease 20140211 Type 2 diabetes Lactobacillus Gastrointestinal tract Increase 20140211 Type 2 diabetes Proteobacteria Gastrointestinal tract Increase 20140211 Type 1 diabetes Bacteroidaceae Gastrointestinal tract Increase 20613793 Type 1 diabetes Bacteroides Gastrointestinal tract Increase 20613793 Type 1 diabetes Bacteroides fragilis Gastrointestinal tract Decrease 20613793 Type 1 diabetes Bacteroides ovatus Gastrointestinal tract Increase 20613793 Type 1 diabetes Bacteroides sp. CJ78 Gastrointestinal tract Increase 20613793 Type 1 diabetes Bacteroides thetaiotaomicron Gastrointestinal tract Increase 20613793 Type 1 diabetes Bacteroides uniformis Gastrointestinal tract Increase 20613793 Type 1 diabetes Bacteroides vulgatus Gastrointestinal tract Decrease 20613793 Type 1 diabetes Bacteroidetes Gastrointestinal tract Increase 20613793 Type 1 diabetes Clostridia Gastrointestinal tract Decrease 20613793 Type 1 diabetes Eubacteriaceae Gastrointestinal tract Decrease 20613793 Type 1 diabetes Eubacterium eligens Gastrointestinal tract Decrease 20613793 Type 1 diabetes Eubacterium rectale Gastrointestinal tract Decrease 20613793 Type 1 diabetes Faecalibacterium Gastrointestinal tract Decrease 20613793 Type 1 diabetes Firmicutes Gastrointestinal tract Decrease 20613793 Type 1 diabetes Human intestinal firmicute CB47 Gastrointestinal tract Decrease 20613793 Type 1 diabetes Human intestinal firmicute CO19 Gastrointestinal tract Decrease 20613793 Type 1 diabetes Lachnospiraceae Gastrointestinal tract Decrease 20613793 Type 1 diabetes Porphyromonadaceae Gastrointestinal tract Decrease 20613793 Type 1 diabetes Rikenellaceae Gastrointestinal tract Increase 20613793 Type 1 diabetes Ruminococcaceae Gastrointestinal tract Decrease 20613793 Crohn's disease(CD) Enterococcus faecium Gastrointestinal tract Increase 20722058 Crohn's disease(CD) Escherichia coli Gastrointestinal tract Increase 20722058 Bacterial Vaginosis Actinobacteria Vaginal Increase 20819230 Bacterial Vaginosis Aerococcus Vaginal Increase 20819230 Bacterial Vaginosis Atopobium Vaginal Increase 20819230 Bacterial Vaginosis Atopobium vaginae Vaginal Increase 20819230 Bacterial Vaginosis Eggerthella Vaginal Increase 20819230 Bacterial Vaginosis Firmicutes Vaginal Decrease 20819230 Bacterial Vaginosis Fusobacteria Vaginal Increase 20819230 Bacterial Vaginosis Gardnerella Vaginal Increase 20819230 Bacterial Vaginosis Gardnerella vaginalis Vaginal Increase 20819230 Bacterial Vaginosis Lactobacillus iners Vaginal Decrease 20819230 Bacterial Vaginosis Leptotrichia Vaginal Increase 20819230 Bacterial Vaginosis Megasphaera Vaginal Increase 20819230 Bacterial Vaginosis Mobiluncus Vaginal Increase 20819230 Bacterial Vaginosis Papillibacter Vaginal Increase 20819230 Bacterial Vaginosis Prevotella Vaginal Increase 20819230 Type 2 diabetes Faecalibacterium prausnitzii Gastrointestinal tract Decrease 20876719 Type 2 diabetes Proteobacteria Gastrointestinal tract Increase 20876719 Asthma Comamonadaceae Bronchial Increase 21194740 Asthma Oxalobacteraceae Bronchial Increase 21194740 Asthma Sphingomonadaceae Bronchial Increase 21194740 Colorectal carcinoma Bacteroides Gastrointestinal tract Increase 21297998 Colorectal carcinoma Prevotella Gastrointestinal tract Increase 21297998 COPD Haemophilus Lung left upper lobe Increase 21364979 COPD Pseudomonas Lung Increase 21364979 Kidney stones Oxalobacter formigenes Gastrointestinal tract Decrease 21460356 Whipple's disease Tropheryma whipplei Gastrointestinal tract Increase 21461659 Liver cirrhosis Bacilli Gastrointestinal tract Increase 21574172 Liver cirrhosis Bacteroidaceae Gastrointestinal tract Decrease 21574172 Liver cirrhosis Bacteroidetes Gastrointestinal tract Decrease 21574172 Liver cirrhosis Enterobacteriaceae Gastrointestinal tract Increase 21574172 Liver cirrhosis Enterococcus faecalis Gastrointestinal tract Increase 21574172 Liver cirrhosis Fusobacteria Gastrointestinal tract Increase 21574172 Liver cirrhosis Fusobacteriaceae Gastrointestinal tract Increase 21574172 Liver cirrhosis Lachnospira Gastrointestinal tract Decrease 21574172 Liver cirrhosis Lachnospiraceae Gastrointestinal tract Decrease 21574172 Liver cirrhosis Pasteurellaceae Gastrointestinal tract Increase 21574172 Liver cirrhosis Proteobacteria Gastrointestinal tract Increase 21574172 Liver cirrhosis Streptococcaceae Gastrointestinal tract Increase 21574172 Liver cirrhosis Veillonellaceae Gastrointestinal tract Increase 21574172 Ulcerative colitis Actinobacteria Gastrointestinal tract Increase 21621540 Ulcerative colitis Proteobacteria Gastrointestinal tract Increase 21621540 Necrotizing Enterocolitis Actinobacteria Gastrointestinal tract Decrease 21674011 Necrotizing Enterocolitis Bacteroidetes Gastrointestinal tract Decrease 21674011 Necrotizing Enterocolitis Firmicutes Gastrointestinal tract Decrease 21674011 Necrotizing Enterocolitis Proteobacteria Gastrointestinal tract Increase 21674011 Irritable bowel syndrome(IBS) Acidobacteriaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Aeromonadaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Alteromonadaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Anaerovorax Gastrointestinal tract Decrease 21741921 Irritable bowel syndrome(IBS) Bacillaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Bacteroidaceae Gastrointestinal tract Decrease 21741921 Irritable bowel syndrome(IBS) Bacteroides Gastrointestinal tract Decrease 21741921 Irritable bowel syndrome(IBS) Bacteroides vulgatus Gastrointestinal tract Decrease 21741921 Irritable bowel syndrome(IBS) Bacteroidetes Gastrointestinal tract Decrease 21741921 Irritable bowel syndrome(IBS) Cellulomonadaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Clostridiaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Coxiellaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Desulfobacteraceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Desulfovibrionaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Dorea Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Enterobacteriaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Eubacteriaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Eubacterium Gastrointestinal tract Decrease 21741921 Irritable bowel syndrome(IBS) Gammaproteobacteria Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Haemophilus Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Haemophilus parainfluenzae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Lachnospiraceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Nitrospiraceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Paenibacillaceae Gastrointestinal tract Decrease 21741921 Irritable bowel syndrome(IBS) Pasteurellaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Peptostreptococcaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Polyangiaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Porphyromonadaceae Gastrointestinal tract Decrease 21741921 Irritable bowel syndrome(IBS) Prevotellaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Promicromonosporaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Proteobacteria Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Ruminococcus Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Streptococcaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Syntrophobacteraceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Thiotrichaceae Gastrointestinal tract Increase 21741921 Irritable bowel syndrome(IBS) Veillonella Gastrointestinal tract Increase 21741921 Cystic fibrosis Xanthomonas Lung left upper lobe Increase 21796216 Colorectal carcinoma Fusobacterium nucleatum Gastrointestinal tract Increase 22009989 Colorectal carcinoma Bacteroidetes Gastrointestinal tract Decrease 22009990 Colorectal carcinoma Clostridia Gastrointestinal tract Decrease 22009990 Colorectal carcinoma Firmicutes Gastrointestinal tract Decrease 22009990 Colorectal carcinoma Fusobacterium Gastrointestinal tract Increase 22009990 Type 1 diabetes Acetonema Gastrointestinal tract Decrease 22043294 Type 1 diabetes Actinobacillus Gastrointestinal tract Increase 22043294 Type 1 diabetes Actinobacteria Gastrointestinal tract Increase 22043294 Type 1 diabetes Aggregatibacter Gastrointestinal tract Increase 22043294 Type 1 diabetes Akkermansia Gastrointestinal tract Decrease 22043294 Type 1 diabetes Alistipes Gastrointestinal tract Increase 22043294 Type 1 diabetes Anaerofilum Gastrointestinal tract Decrease 22043294 Type 1 diabetes Anaerostipes Gastrointestinal tract Decrease 22043294 Type 1 diabetes Anaerotruncus Gastrointestinal tract Decrease 22043294 Type 1 diabetes Bacillus Gastrointestinal tract Decrease 22043294 Type 1 diabetes Bacterium 08.96.4 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Bacterium ASF500 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Bacterium B4C2-5 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Bacterium Ba2 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium C15 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium G100VIII Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium ic1214 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium ic1258 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium ic1292 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium ic1296 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Bacterium ic1311 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium ic1379 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Bacterium ic1391 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium MB7-1 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium mpn-isolate group 19 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium mpn-isolate group 22 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Bacterium mpn-isolate group 24 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Bacterium mpn-isolate group 27 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium mpn-isolate group 5 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium 'New Zealand B' Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacterium str. 31285 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Bacterium YE62 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Bacterium YE64 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacteroidaceae bacterium Smarlab 3301643 Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacteroides Gastrointestinal tract Increase 22043294 Type 1 diabetes Bacteroidetes Gastrointestinal tract Increase 22043294 Type 1 diabetes Bifidobacterium Gastrointestinal tract Increase 22043294 Type 1 diabetes Bovine rumen bacterium JPR13 Gastrointestinal tract Increase 22043294 Type 1 diabetes Brenneria Gastrointestinal tract Increase 22043294 Type 1 diabetes Burkholderiales bacterium Smarlab 3302047 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium ART55/1 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium L1-810 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium L1-952 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium L2-50 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium M104/1 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium M21/2 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium M50/1 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium P607 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium PH05YB02 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium Ph07AY02 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium PH07AY3 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium PH07AY5 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium PH07BY04 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium SL6/1/1 Gastrointestinal tract Increase 22043294 Type 1 diabetes Butyrate-producing bacterium SM4/1 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium SR1/1 Gastrointestinal tract Increase 22043294 Type 1 diabetes Butyrate-producing bacterium SR1/5 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium SS2/1 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Butyrate-producing bacterium SSC/2 Gastrointestinal tract Increase 22043294 Type 1 diabetes Butyrate-producing bacterium T2-132 Gastrointestinal tract Increase 22043294 Type 1 diabetes Citrobacter Gastrointestinal tract Increase 22043294 Type 1 diabetes Clostridia bacterium TSW07CA7 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Clostridiaceae bacterium bSSV31 Gastrointestinal tract Increase 22043294 Type 1 diabetes Clostridiaceae bacterium LEMV63 Gastrointestinal tract Increase 22043294 Type 1 diabetes Clostridiaceae bacterium SH032 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Clostridiaceae bacterium SK061 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Clostridiales bacterium 80/3 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Clostridiales bacterium A2-162 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Clostridiales bacterium AHT16 Gastrointestinal tract Increase 22043294 Type 1 diabetes Clostridiales bacterium L2-14 Gastrointestinal tract Increase 22043294 Type 1 diabetes Clostridium innocuum Gastrointestinal tract Increase 22043294 Type 1 diabetes Clostridium ramosum Gastrointestinal tract Increase 22043294 Type 1 diabetes Clostridium spiroforme Gastrointestinal tract Increase 22043294 Type 1 diabetes Collinsella Gastrointestinal tract Increase 22043294 Type 1 diabetes Coprobacillus Gastrointestinal tract Increase 22043294 Type 1 diabetes Cronobacter Gastrointestinal tract Increase 22043294 Type 1 diabetes Dehalobacterium Gastrointestinal tract Increase 22043294 Type 1 diabetes Desulfotomaculum Gastrointestinal tract Increase 22043294 Type 1 diabetes Dialister Gastrointestinal tract Decrease 22043294 Type 1 diabetes Dysgonomonas Gastrointestinal tract Decrease 22043294 Type 1 diabetes Edwardsiella Gastrointestinal tract Increase 22043294 Type 1 diabetes Enterobacter Gastrointestinal tract Increase 22043294 Type 1 diabetes Erwinia Gastrointestinal tract Increase 22043294 Type 1 diabetes Erysipelothrix Gastrointestinal tract Decrease 22043294 Type 1 diabetes Escherichia Gastrointestinal tract Increase 22043294 Type 1 diabetes Eubacterium Gastrointestinal tract Increase 22043294 Type 1 diabetes Eubacterium tortuosum Gastrointestinal tract Increase 22043294 Type 1 diabetes Faecalibacterium Gastrointestinal tract Decrease 22043294 Type 1 diabetes Firmicutes Gastrointestinal tract Decrease 22043294 Type 1 diabetes Firmicutes bacterium EG14 Gastrointestinal tract Increase 22043294 Type 1 diabetes Firmicutes str. C29 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Fusobacteria Gastrointestinal tract Decrease 22043294 Type 1 diabetes Fusobacterium Gastrointestinal tract Decrease 22043294 Type 1 diabetes Gram-negative bacterium cL10-2b-4 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Haemophilus Gastrointestinal tract Increase 22043294 Type 1 diabetes Hafnia Gastrointestinal tract Increase 22043294 Type 1 diabetes Human intestinal firmicute CB47 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Human intestinal firmicute CO13 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Human intestinal firmicute CO19 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Human intestinal firmicute CO2 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Human intestinal firmicute CO35 Gastrointestinal tract Increase 22043294 Type 1 diabetes Human intestinal firmicute CO4 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Human intestinal firmicute CS26 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Klebsiella Gastrointestinal tract Increase 22043294 Type 1 diabetes Lachnobacterium Gastrointestinal tract Decrease 22043294 Type 1 diabetes Lachnospiraceae bacterium A2 Gastrointestinal tract Increase 22043294 Type 1 diabetes Lactobacillus Gastrointestinal tract Decrease 22043294 Type 1 diabetes Lactococcus Gastrointestinal tract Decrease 22043294 Type 1 diabetes Mannheimia Gastrointestinal tract Increase 22043294 Type 1 diabetes Mastodon intestinal bacterium AN-22-6 Gastrointestinal tract Increase 22043294 Type 1 diabetes Mogibacterium Gastrointestinal tract Decrease 22043294 Type 1 diabetes Odoribacter Gastrointestinal tract Decrease 22043294 Type 1 diabetes Oligella Gastrointestinal tract Increase 22043294 Type 1 diabetes Oscillibacter Gastrointestinal tract Decrease 22043294 Type 1 diabetes Oscillospira Gastrointestinal tract Decrease 22043294 Type 1 diabetes Oscillospiraceae bacterium NML 061048 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Pantoea Gastrointestinal tract Increase 22043294 Type 1 diabetes Parabacteroides Gastrointestinal tract Decrease 22043294 Type 1 diabetes Pasteurella Gastrointestinal tract Increase 22043294 Type 1 diabetes Pectobacterium Gastrointestinal tract Increase 22043294 Type 1 diabetes Peptostreptococcus Gastrointestinal tract Increase 22043294 Type 1 diabetes Phascolarctobacterium Gastrointestinal tract Decrease 22043294 Type 1 diabetes Porphyromonas Gastrointestinal tract Decrease 22043294 Type 1 diabetes Prevotella Gastrointestinal tract Decrease 22043294 Type 1 diabetes Proteobacteria Gastrointestinal tract Increase 22043294 Type 1 diabetes Pusillimonas Gastrointestinal tract Increase 22043294 Type 1 diabetes Roseburia Gastrointestinal tract Decrease 22043294 Type 1 diabetes Rumen bacterium 8/94-32 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Rumen bacterium R-7 Gastrointestinal tract Increase 22043294 Type 1 diabetes Rumen bacterium R-9 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Salmonella Gastrointestinal tract Increase 22043294 Type 1 diabetes Segmented filamentous bacterium Gastrointestinal tract Increase 22043294 Type 1 diabetes Serratia Gastrointestinal tract Increase 22043294 Type 1 diabetes Shigella Gastrointestinal tract Increase 22043294 Type 1 diabetes Shuttleworthia Gastrointestinal tract Decrease 22043294 Type 1 diabetes Solobacterium Gastrointestinal tract Increase 22043294 Type 1 diabetes Streptococcus Gastrointestinal tract Increase 22043294 Type 1 diabetes Subdoligranulum Gastrointestinal tract Decrease 22043294 Type 1 diabetes Sutterella Gastrointestinal tract Decrease 22043294 Type 1 diabetes Swine fecal bacterium FPC67 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Swine fecal bacterium FPC70 Gastrointestinal tract Increase 22043294 Type 1 diabetes Swine fecal bacterium RF3E-Xyl1 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Swine fecal bacterium SD-Pec1 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Swine manure pit bacterium PPC108 Gastrointestinal tract Increase 22043294 Type 1 diabetes Tenericutes Gastrointestinal tract Decrease 22043294 Type 1 diabetes Terrahaemophilus Gastrointestinal tract Increase 22043294 Type 1 diabetes Unidentified bacterium ZF3 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Veillonella Gastrointestinal tract Increase 22043294 Type 1 diabetes Verrucomicrobia Gastrointestinal tract Decrease 22043294 Type 1 diabetes Verrucomicrobia bacterium MS-F-88 Gastrointestinal tract Decrease 22043294 Type 1 diabetes Vibrio Gastrointestinal tract Increase 22043294 Type 1 diabetes Yersinia Gastrointestinal tract Increase 22043294 Psoriasis Propionibacterium Skin Decrease 22065152 Psoriasis Proteobacteria Skin Increase 22065152 Psoriasis Staphylococcus Skin Decrease 22065152 Ileal Crohn's disease(CD) Lachnospiraceae Gastrointestinal tract Increase 22068912 Atopic dermatitis Staphylococcus aureus Skin Decrease 22310478 Atopic dermatitis Staphylococcus epidermidis Skin Decrease 22310478 COPD Burkholderia Lung Increase 22427533 Cystic fibrosis Burkholderia Lung Increase 22427533 COPD Lactobacillus Lung Increase 22427533 Cystic fibrosis Lactobacillus Lung Increase 22427533 Periodontal Actinomyces Subgingival Decrease 22675498 Periodontal Haemophilus Subgingival Increase 22675498 Periodontal Selenomonas Subgingival Increase 22675498 Periodontal Streptococcus Subgingival Decrease 22675498 Bacterial Vaginosis Eggerthella Vaginal Increase 22719852 Bacterial Vaginosis Leptotrichia amnionii Vaginal Increase 22719852 Allergic asthma Helicobacter pylori Gastric Increase 22971068 Clostridium difficile infection(CDI) Alistipes Gastrointestinal tract Decrease 23323867 Clostridium difficile infection(CDI) Bacteroidaceae Gastrointestinal tract Decrease 23323867 Clostridium difficile infection(CDI) Bacteroidetes Gastrointestinal tract Decrease 23323867 Clostridium difficile infection(CDI) Firmicutes Gastrointestinal tract Decrease 23323867 Clostridium difficile infection(CDI) Lachnospiraceae Gastrointestinal tract Decrease 23323867 Clostridium difficile infection(CDI) Parabacteroides Gastrointestinal tract Decrease 23323867 Clostridium difficile infection(CDI) Porphyromonadaceae Gastrointestinal tract Decrease 23323867 Clostridium difficile infection(CDI) Proteobacteria Gastrointestinal tract Increase 23323867 Clostridium difficile infection(CDI) Rikenellaceae Gastrointestinal tract Decrease 23323867 Clostridium difficile infection(CDI) Ruminococcaceae Gastrointestinal tract Decrease 23323867 Clostridium difficile infection(CDI) Verrucomicrobiaceae Gastrointestinal tract Decrease 23323867 Skin and mucosal infections Acinetobacter Skin Increase 23796786 Skin and mucosal infections Corynebacterium Skin Decrease 23796786 New-onset untreated rheumatoid arthrits Prevotella copri Gastrointestinal tract Increase 24192039 Crohn's disease(CD) Bacteroidales Gastrointestinal tract Decrease 24629344 Crohn's disease(CD) Clostridiales Gastrointestinal tract Decrease 24629344 Crohn's disease(CD) Erysipelotrichales Gastrointestinal tract Decrease 24629344 Crohn's disease(CD) Fusobacteriaceae Gastrointestinal tract Increase 24629344 Crohn's disease(CD) Veillonellaceae Gastrointestinal tract Increase 24629344 Periodontal Porphyromonas Subgingival Increase 24692635 Periodontal Prevotella Subgingival Increase 24692635 Periodontal Tannerella Subgingival Increase 24692635 Periodontal Treponema Subgingival Increase 24692635 Liver cirrhosis Alistipes Gastrointestinal tract Decrease 25079328 Liver cirrhosis Alistipes finegoldii Gastrointestinal tract Decrease 25079328 Liver cirrhosis Alistipes putredinis Gastrointestinal tract Decrease 25079328 Liver cirrhosis Bacteroides Gastrointestinal tract Decrease 25079328 Liver cirrhosis Bacteroides eggerthii Gastrointestinal tract Decrease 25079328 Liver cirrhosis Bacteroides finegoldii Gastrointestinal tract Decrease 25079328 Liver cirrhosis Bacteroides sp. D20 Gastrointestinal tract Decrease 25079328 Liver cirrhosis Bacteroides uniformis Gastrointestinal tract Decrease 25079328 Liver cirrhosis Bacteroidetes Gastrointestinal tract Decrease 25079328 Liver cirrhosis Bilophila Gastrointestinal tract Decrease 25079328 Liver cirrhosis Bilophila wadsworthia Gastrointestinal tract Decrease 25079328 Liver cirrhosis Clostridium Gastrointestinal tract Increase 25079328 Liver cirrhosis Coprococcus Gastrointestinal tract Decrease 25079328 Liver cirrhosis Dorea Gastrointestinal tract Decrease 25079328 Liver cirrhosis Eubacterium Gastrointestinal tract Decrease 25079328 Liver cirrhosis Eubacterium eligens Gastrointestinal tract Decrease 25079328 Liver cirrhosis Eubacterium hallii Gastrointestinal tract Decrease 25079328 Liver cirrhosis Eubacterium rectale Gastrointestinal tract Decrease 25079328 Liver cirrhosis Faecalibacterium Gastrointestinal tract Decrease 25079328 Liver cirrhosis Faecalibacterium prausnitzii Gastrointestinal tract Decrease 25079328 Liver cirrhosis Fusobacteria Gastrointestinal tract Increase 25079328 Liver cirrhosis Fusobacterium Gastrointestinal tract Increase 25079328 Liver cirrhosis Haemophilus Gastrointestinal tract Increase 25079328 Liver cirrhosis Haemophilus parainfluenzae Gastrointestinal tract Increase 25079328 Liver cirrhosis Holdemania Gastrointestinal tract Decrease 25079328 Liver cirrhosis Lactobacillus Gastrointestinal tract Increase 25079328 Liver cirrhosis Lactobacillus salivarius Gastrointestinal tract Increase 25079328 Liver cirrhosis Megasphaera Gastrointestinal tract Increase 25079328 Liver cirrhosis Odoribacter Gastrointestinal tract Decrease 25079328 Liver cirrhosis Odoribacter splanchnicus Gastrointestinal tract Decrease 25079328 Liver cirrhosis Parabacteroides Gastrointestinal tract Decrease 25079328 Liver cirrhosis Parabacteroides distasonis Gastrointestinal tract Decrease 25079328 Liver cirrhosis Parabacteroides merdae Gastrointestinal tract Decrease 25079328 Liver cirrhosis Phascolarctobacterium Gastrointestinal tract Decrease 25079328 Liver cirrhosis Prevotella Gastrointestinal tract Increase 25079328 Liver cirrhosis Proteobacteria Gastrointestinal tract Increase 25079328 Liver cirrhosis Roseburia Gastrointestinal tract Decrease 25079328 Liver cirrhosis Roseburia hominis Gastrointestinal tract Decrease 25079328 Liver cirrhosis Roseburia intestinalis Gastrointestinal tract Decrease 25079328 Liver cirrhosis Ruminococcus Gastrointestinal tract Decrease 25079328 Liver cirrhosis Ruminococcus gnavus Gastrointestinal tract Increase 25079328 Liver cirrhosis Streptococcus Gastrointestinal tract Increase 25079328 Liver cirrhosis Streptococcus anginosus Gastrointestinal tract Increase 25079328 Liver cirrhosis Streptococcus parasanguinis Gastrointestinal tract Increase 25079328 Liver cirrhosis Streptococcus salivarius Gastrointestinal tract Increase 25079328 Liver cirrhosis Streptococcus vestibularis Gastrointestinal tract Increase 25079328 Liver cirrhosis Subdoligranulum Gastrointestinal tract Decrease 25079328 Liver cirrhosis Tannerella Gastrointestinal tract Decrease 25079328 Liver cirrhosis Veillonella Gastrointestinal tract Increase 25079328 Liver cirrhosis Veillonella atypica Gastrointestinal tract Increase 25079328 Liver cirrhosis Veillonella dispar Gastrointestinal tract Increase 25079328 Liver cirrhosis Veillonella parvula Gastrointestinal tract Increase 25079328