Here are two examples for ComiR Analysis Package.

Note:
This program needs to install these software packages: python, numpy, pandas, scipy or you can just install Anaconda from https://www.anaconda.com/download/.

Correlation Analysis: Calculate the correlation between each other in expression profile
command line: python analysis.py 1 spearman example.txt result.txt

Mutual Rank Analysis:
command line: python analysis.py 2 pearson example.txt result.txt

Parameters:
Type : 1 or 2, 1 stands for correlation analysis, 2 stand for mutual rank analysis.
Method: spearman, pearson, kendall for type 1 ; spearman, pearson for type 2.
Input file: 'example.txt' is an example file of input , and make sure the input file is in the same directory with the analysis.py file.
Output file: 'result.txt' is a output file, you can rename it in the command.

